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I managed to successfully patch org.eclipse.orion.client with https://bugs.eclipse.org/bugs/attachment.cgi?id=209193 (from bug 367108), which I verified with git-bash "git status". Unfortunally I'm not able to check that using Orion. Visiting Git Status page ends up with bunch of "timeout exceeded" errors. It's probably GET /gitapi/branch/file/{id} that takes so much time. See the following screenshot.
Created attachment 209195 [details] Screenshot showing Git Status page after timeouts have been logged
I wasn't able to reproduce this problem on my local server.
It failed one more time when I tried it, but then it started to work correctly on each subsequent page opening. I assume it had been an intermittent failure.