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See bug 349661.
IMHO it's better to display an empty Git Log then hide the link to it. Seeing the log with a message like "no commits" the user is more likely to understand what's going on.
Closing as part of a mass clean up of inactive bugs. Please reopen if this problem still occurs or is relevant to you. For more details see: https://dev.eclipse.org/mhonarc/lists/orion-dev/msg03444.html