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if there is a file with same name of source file in workspace like below, the debugging process will open that file, which not belongs the current project, instead of the source file in project. cpp [the workspace] |-- HelloDebug [the project] | |-- Debug | | |-- HelloDebug | | |-- makefile | | |-- objects.mk | | |-- sources.mk | | `-- src | | |-- HelloDebug.d | | |-- HelloDebug.o | | `-- subdir.mk | `-- src | `-- HelloDebug.c [the source file] `-- src [not belongs to any project] `-- HelloDebug.c [the file has same name with source file in the project] Steps to reproduce: (1)Create a new C Project (HelloDebug in the above) (2)Copy the src folder out to the workspace (3)Insert a breakpoint and start debug (4)The file outside the project will be open Note: If change the outside folder's name (src to src2 or whatever else), then everything seems to be fine again.