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Build 2.1RC1 JavaConventions should reject a custom output folder that coincidate with a source folder if this source folder is not equal to the custom output folder. Allowing this scenario would lead to phantom packages to be created in the source folder when building.
Indeed a source folder can only be used as a target by its own output folder, so as to avoid package directory pollution. We should also disallow using a library folder as an output folder (within same project).
Fixed in latest.
Verified.
Due to bug 36465, had to relax some of the collision check. Only specific output folders are checked, the default output can still coincidate.