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Build Identifier: If we search (Ctrl-H) for a word we get a yellow arrow to the left of all lines with hits. If we put a breakpoint on theat same line the blue breakpoint can not be seen. Suggested solvation: Larges breakpoint icon or set breakpoint icon allways on top over yellow arrow. Reproducible: Always Steps to Reproduce: 1.Use Ctrl+H and search for a word you know exists in your code 2.A yellow arrow will be put to the left of that line. 3.Double-clock on that arrow means "Add Breakpoint". A breakpoint i s set but is totally hidden behind the arrow.
Move to JDT/Debug
The edtior ruler has layers/levels for annotations. I think this has been discussed before but I can't find the relevant bug(s). This is a general problem for the text framework, but hover does show descriptions of all annotations present on the current line.
see bug 80089
*** This bug has been marked as a duplicate of bug 80089 ***
For your entertainment you might also have a look at bug 17557 (wow that one was originally reported against Eclipse 2.0 :) Note that bug 17557 also mentions the preference Java > Editor > Hovers [ ] Expand vertical ruler icons upon hovering which some people consider to be of help for this issue.