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build output filters (in compiler-other prefs) does not prevent compilation of ignored output folders The problem is while using the project folder as a CVS working folder (with some cvs tools like winCVS) the CVS/Base folder contains some java files that cause error (invalid package)
The mentionned filter is only affecting the non-java resources. We are currently considering allowing to filter out java resources as well.
*** This bug has been marked as a duplicate of 22039 ***