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Build ID: I20080617-2000 The classpath tab of Run Configurations displays the combined classpath of all the projects the main class depends on. There should be a tooltip to show from which dependent project a classpath entry originates. So it would be easier to remove or change an entry in the dependent projects. e.g. [MYVARIABLE/log4j.jar added in MyBaseProject] or only [from MyBaseProject]