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I20071009-2225 In a huge workspace (ie. with at least 1 thousant plugins installed), if you had a Java editor opened before shutting down the workbench, when you restart the "Initializing Java Tooling" job can remain several seconds at 0% with a sub-message: "Configuring classpath containers".
Note to see the original problem you need to have 'Link with editor' enabled in Package Explorer
Created attachment 80131 [details] Proposed fix
Fix released for 3.4M3
Verified for 3.4M3 using I20071029-0010 build.