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Currently, there are the PaletteViewerPreferences which are set in a PreferenceStore and the FlyoutPreferences which use org.eclipse.core.runtime.Preferences. They could be unified. While the FlyoutPreferences are live (changing a property in one editor, immediately updates all other open editors), the PaletteViewerPreferences are not. Also, there is no easy way to set the defaults for these preferences. Note that I'm suggesting an API change here, and so this wouldn't really be for a point release.