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Currently the CopyingResource blindly appends UIR fragment queries to hrefs for elements in other resources. This is inappropriate since fragment queries are only supported by resources that don't use the default EMF format for URI fragments (i.e. resources that use UUIDs). Copying a resource that contains a reference to elements in a resource using the default EMF format for URI fragments results in a resource that cannot be loaded.
Created attachment 54031 [details] Proposed patch Removed all fragment related code from CopyingHelper#getHREF.
I committed the patch.
[GMF Restructure] Bug 319140 : product GMF and component Runtime EMF was the original product and component for this bug