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wtp-sdk-I-I200608241917-200608241917.zip Toggling a comment (or adding and removing a block comment) on the line of a collapsed section makes the folding states go out of sync. You may need to toggle/untoggle or add/remove to trigger this.
reassigning to inbox
Assuming I understand your original issue here this appears to be fixed with a combination of Bug 281380 (code folding) and Bug 86520 (comment toggling).
Just waiting for Bug 86520 then I will check weather this is still a problem.
Resolved by Bug 86520.