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Using 3.2 M5 + test case of bug 129137. Set Javadoc compiler option "Malformed Javadoc comments" to "Ignore" => observe that deprecation warning is still reported in Javadoc. This warning goes away only when box "Report deprecated references" is unchecked. This behavior is not correct, warning should disappear as soon as user want to ignore malformed javadoc comments!
Fixed and released in HEAD. Change ProblemReporter.getIrritant(long) method to return only CompilerOptions.InvalidJavadoc value even for Javadoc deprecation problems. Before, CompilerOptions.UsingDeprecatedAPI was also returned and this made reporting error in Javadoc as soon as compiler reported deprecation in Java code whatever the value of javadoc options were... Test cases added in JavadocBugsTests
Verified using I20060328-0010 for 3.2M6