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See VCM bug http://dev.eclipse.org/bugs/show_bug.cgi?id=12033 The build is a bit old, maybe you are doing better here. I've seen this same behaviour though - UI activation on startup is causing a lot of work to happen in JDT-core, and all this appears to be occuring the UI thread. Severity 'major' was to reflect severity reported assigned to the above VCM bug. Added reporter of VCM bug to CC of this bug.
We got many complaints when we did not persist the state of the type hierarchy. Users are expecting to have the workbench fully restored on start-up. Computing the type hierarchy isn't cheap, moving the computation in a background thread is not an option given that the CORE infrastructure is not thread safe.
We might want to investigate persisting hierarchies ?
Is essentially the same as 15486. *** This bug has been marked as a duplicate of 15486 ***