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Organize Imports will change the order of imports. This causes "compare noise", making "Orgainze imports" less useful for larger projects which are stored in a source repository. I'd like to be able to tell Eclipse to "ignore refactorings", just as it is possible to tell it to "ignore whitespace" when comparing. In this case Eclipse would of course ignore ordering of imports. ;-)
Moving to JDT UI
We have started looking into this. But no promise for 3.2.
(In reply to comment #2) > We have started looking into this. But no promise for 3.2. What are you looking into? The specific issue of Organize Imports compare noise or refactoring compare noise generally?
Filtering the refactoring noise.