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up to 3.1 M2 CompilationUnitAnnotationModel contains the logic to map temporary reconcile-time problems to persistent Markers created by the last build. See CompilationUnitAnnotationModel::reportProblems(List). Currently, any previous annotations are discarded and replaces with new ones, even if this is not needed. The result is a huge annotation model event fired with every reconcile, resulting in all annotations being repainted. The mapping algorithm should try to come up with the minimal change required by the reconcile.
There were bugs in the past about missing annotation and marker updates in the editor which got fixed with the current approach. Those bugs would have to be identified and verified against a new implementation.
This bug hasn't had any activity in quite some time. Maybe the problem got resolved, was a duplicate of something else, or became less pressing for some reason - or maybe it's still relevant but just hasn't been looked at yet. If you have further information on the current state of the bug, please add it. The information can be, for example, that the problem still occurs, that you still want the feature, that more information is needed, or that the bug is (for whatever reason) no longer relevant. -- The automated Eclipse Genie.