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In RSA, if you're working in the modelling perspective, your projects are displayed in the Model Explorer (rather than the Package Explorer). This appears to be very similar to the package explorer, however, if you right click on a java project the option to "Convert to an AJ project" is greyed out. To convert a project to an aj project you have to open the package explorer. It would be better if you could convert your project to an AJ project without having to open a new view (the package explorer isn't part of the default setup for the modelling perspective).
Now fixed - changed the selection listeners in AddAJNatureAction and RemoveAJNatureAction to test for adapters of IProject instead of instances so that the actions are not disabled unneccesarily. Fixed in the following builds: AJDT 1.2.1 for Eclipse 3.0: BUILD COMPLETE - build.556 Date of build: 10/27/2005 14:00:34 Time to build: 44 minutes 35 seconds AJDT 1.3 for Eclipse 3.1: BUILD COMPLETE - build.163 Date of build: 10/27/2005 14:46:06 Time to build: 37 minutes 30 seconds