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[m2e-users] using a repository built by m2eclipse 0.12.1 with m2e 1.0 - invalid MANIFEST.MF

I have just upgraded to Eclipse 3.7 and m2e 1.0. I pointed m2e to my old repository, downloaded with the previous m2eclipse 0.12.1. Now, some dependencies are seen as invalidĀ  - the MANIFEST.MF file of the maven downloaded jar is considered invalid: when opened, it displays:
invalid LOC header (bad signature)
What is more, m2e now completely ignores the entire jar - meaning it doesn't show up in either the Eclipse index or in the dependency management.
As far as I could observe, these were all dependencies defined with a runtime scope, but I'm not certain that is relevant (may be a coincidence).
If I delete the entire dependency from the repo by hand, and redownload it again, it works fine.
Is it good practice to redownload the entire repository again with m2e 1.0?
Is this a known issue?
Thanks.

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