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[news.eclipse.tools.jdt] APT and jdt.compiler.tool plugins

In the course of working on an Eclipse-based tool, I've noticed that our debug runtime is complaining that it can't resolve a few of the JDT bundles related to APT and compiler.tool. I'm pretty sure the reason is that those plugins require a J2SE-16. execution environment but our tool is designed to run under 1.5.
My question is, what, if anything, will we be missing out on by not supporting those plugins? I reviewed some info on the APT home page, but I would like to know if all annotation processing functionality in Eclipse essentially requires 1.6 or not.
Similarly, it appears that the jdt.compiler.tool plugin is related to JSR 199 support, but I don't really know what functionality in Eclipse that maps to. Any insight about that is appreciated, too.


TIA,
Eric