[rdf4j-dev] Build failed in Jenkins: rdf4j-storage-master-build #34

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[rdf4j-dev] Build failed in Jenkins: rdf4j-storage-master-build #34
From: hudsonbuild@xxxxxxxxxxx
Date: Fri, 25 Jan 2019 21:16:08 -0500 (EST)
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See <https://ci.eclipse.org/rdf4j/job/rdf4j-storage-master-build/34/display/redirect?page=changes>

Changes:

[Håvard Ottestad] 99 visualize min count, max count and datatype

[Håvard Ottestad] 99 add title to diagram

[Håvard Ottestad] 99 test for manually verifying output

[Håvard Ottestad] #104 renamed Shape to NodeShape

[Håvard Ottestad] Fixed version in build and added caching to travis

[Håvard Ottestad] #106 simple initial implementation for sh:or with sh:datatype

[Håvard Ottestad] #106 support for sh:or on aggregated data

[Håvard Ottestad] #106 bug fix and more tests

[Håvard Ottestad] #106 bug fix

[Bart Hanssens] Revert "set master version back to 2.4-SNAPSHOT. Github conflict

[Bart Hanssens] Patch level upgrades logback and slf4j

[Bart Hanssens] Add Override annotation (reported by Netbeans Inspect and Transform

[Bart Hanssens] Changed try-finally to try-with-resources

[Bart Hanssens] Partial rollback: try-with-resources fails on generics

[Bart Hanssens] Update jsonld-java to 0.12.1

[Bart Hanssens] Corrected typo

[Bart Hanssens] Removed unused imports and imports from same package

[Bart Hanssens] Replaced deprecated IRI classes + some code formatting

[Bart Hanssens] Lower-case valuefactory

[Bart Hanssens] Upgraded HttpComponent / HttpCore

[Bart Hanssens] Removed assertj-core 3.10

[Håvard Ottestad] eclipse/rdf4j#1155 use stringbuilder

[Håvard Ottestad] fixes from review

[Bart Hanssens] Updated Apache Commons dependencies

[Håvard Ottestad] eclipse/rdf4j#1182 more logging

[Håvard Ottestad] eclipse/rdf4j#1118 support inheritance on sh:or

[Håvard Ottestad] eclipse/rdf4j#1118 support direct use of sh:or on NodeShape

[Bart Hanssens] Upgrade to latest Mockito 2

[Bart Hanssens] Remove unused cglib

[Bart Hanssens] Updated lucene version in config

[Håvard Ottestad] eclipse/rdf4j#1197 add statements with correct graph

[Håvard Ottestad] fixed tests locally instead of in the test suite and also added a new

[Håvard Ottestad] eclipse/rdf4j#1197 make inferred context behaviour configurable

[Jeen Broekstra] GH-1230 migrate compliance tests to rdf4j-storage

[Jeen Broekstra] GH-1230 renamed sail-model compliance tests to avoid conflict with

[Jeen Broekstra] GH-1230 remove reference to obsolete http-compliance module

[Jeen Broekstra] GH-1230 reorg compliance/testsuites

[jerven.bolleman] Fixes #1199 Replace some REGEX calls that can be expressed as string

[Jeen Broekstra] GH-1225 marked inferencer deprecated

[Jeen Broekstra] GH-1230 fix compile failure due to merge

[Jeen Broekstra] eclipse/rdf4j#1226 SPI/Factory for Schema Caching Inferencer

[Jeen Broekstra] use correct config class

[Jeen Broekstra] add persistence test and fix default condition under which to test

[Håvard Ottestad] eclipse/rdf4j#1234 fixed handling of updates

[Jeen Broekstra] eclipse/rdf4j#1226 added isolation level compliance tests for inferencer

[Jeen Broekstra] rename initialize() to init(), replace usage, clean up tests

[Jeen Broekstra] revert to use of deprecated Repository.initialize() pending merge

[Jeen Broekstra] refactor to remove public use of Repository API in SAIL constructor

[Jeen Broekstra] fixed missing license header

[Jeen Broekstra] fixed shape upload and per-connection update of NodeShape list

[Håvard Ottestad] eclipse/rdf4j#1113 fixed code to support loading of shacl shapes after

[Håvard Ottestad] eclipse/rdf4j#1113 option for disabling NoShapesLoadedException

[Håvard Ottestad] eclipse/rdf4j#1182 use logger instead of println

[Håvard Ottestad] eclipse/rdf4j#1246 shutdown repo to cause error

[Håvard Ottestad] ignore code generated during mvn install

[Håvard Ottestad] eclipse/rdf4j#998 log which shape caused the issue

[Håvard Ottestad] eclipse/rdf4j#998 support SHACL RDF report format

[Håvard Ottestad] eclipse/rdf4j#998 support sh:or better

[Håvard Ottestad] eclipse/rdf4j#998 support for nested validation results

[Håvard Ottestad] eclipse/rdf4j#1109 reuse plan from datatype to implement minLength and

[Håvard Ottestad] eclipse/rdf4j#1109 support for pattern

[Håvard Ottestad] eclipse/rdf4j#1109 support for language in

[Håvard Ottestad] eclipse/rdf4j#1110 support nodeKind

[Håvard Ottestad] eclipse/rdf4j#1247 support implicit and

[Håvard Ottestad] fixes after rebase

[Jeen Broekstra] eclipse/rdf4j#1113 moved graph name constant and fixed compliance test

[Jeen Broekstra] eclipse/rdf4j#1113 added config and factory class for ShaclSail

[Håvard Ottestad] various cleanup and fix for sh:or

[Håvard Ottestad] optimize imports

[Håvard Ottestad] eclipse/rdf4j#998 configurations for enabling logging of diagnostic info

[Håvard Ottestad] eclipse/rdf4j#998 list supported shacl predicates, with test to make

[Bart Hanssens] Upgraded assertj-core

[Håvard Ottestad] eclipse/rdf4j#998 simplify tests

[Bart Hanssens] Use diamond inference Signed-off-by:Bart Hanssens

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[INFO] Installing /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/sail-model/target/rdf4j-sail-model-2.5-SNAPSHOT.pom.asc to /opt/public/hipp/homes/genie.rdf4j/.m2/repository/org/eclipse/rdf4j/rdf4j-sail-model/2.5-SNAPSHOT/rdf4j-sail-model-2.5-SNAPSHOT.pom.asc
[INFO] Installing /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/sail-model/target/rdf4j-sail-model-2.5-SNAPSHOT-sources.jar.asc to /opt/public/hipp/homes/genie.rdf4j/.m2/repository/org/eclipse/rdf4j/rdf4j-sail-model/2.5-SNAPSHOT/rdf4j-sail-model-2.5-SNAPSHOT-sources.jar.asc
[INFO] Installing /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/sail-model/target/rdf4j-sail-model-2.5-SNAPSHOT-javadoc.jar.asc to /opt/public/hipp/homes/genie.rdf4j/.m2/repository/org/eclipse/rdf4j/rdf4j-sail-model/2.5-SNAPSHOT/rdf4j-sail-model-2.5-SNAPSHOT-javadoc.jar.asc
[INFO] 
[INFO] --- nexus-staging-maven-plugin:1.6.7:deploy (injected-nexus-deploy) @ rdf4j-sail-model ---
[INFO] Performing deferred deploys (gathering into "/jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/target/nexus-staging/deferred")...
[INFO] Installing /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/sail-model/target/rdf4j-sail-model-2.5-SNAPSHOT.jar to /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/target/nexus-staging/deferred/org/eclipse/rdf4j/rdf4j-sail-model/2.5-SNAPSHOT/rdf4j-sail-model-2.5-SNAPSHOT.jar
[INFO] Installing /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/sail-model/pom.xml to /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/target/nexus-staging/deferred/org/eclipse/rdf4j/rdf4j-sail-model/2.5-SNAPSHOT/rdf4j-sail-model-2.5-SNAPSHOT.pom
[INFO] Installing /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/sail-model/target/rdf4j-sail-model-2.5-SNAPSHOT-sources.jar to /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/target/nexus-staging/deferred/org/eclipse/rdf4j/rdf4j-sail-model/2.5-SNAPSHOT/rdf4j-sail-model-2.5-SNAPSHOT-sources.jar
[INFO] Installing /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/sail-model/target/rdf4j-sail-model-2.5-SNAPSHOT-javadoc.jar to /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/target/nexus-staging/deferred/org/eclipse/rdf4j/rdf4j-sail-model/2.5-SNAPSHOT/rdf4j-sail-model-2.5-SNAPSHOT-javadoc.jar
[INFO] Installing /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/sail-model/target/rdf4j-sail-model-2.5-SNAPSHOT.jar.asc to /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/target/nexus-staging/deferred/org/eclipse/rdf4j/rdf4j-sail-model/2.5-SNAPSHOT/rdf4j-sail-model-2.5-SNAPSHOT.jar.asc
[INFO] Installing /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/sail-model/target/rdf4j-sail-model-2.5-SNAPSHOT.pom.asc to /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/target/nexus-staging/deferred/org/eclipse/rdf4j/rdf4j-sail-model/2.5-SNAPSHOT/rdf4j-sail-model-2.5-SNAPSHOT.pom.asc
[INFO] Installing /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/sail-model/target/rdf4j-sail-model-2.5-SNAPSHOT-sources.jar.asc to /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/target/nexus-staging/deferred/org/eclipse/rdf4j/rdf4j-sail-model/2.5-SNAPSHOT/rdf4j-sail-model-2.5-SNAPSHOT-sources.jar.asc
[INFO] Installing /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/sail-model/target/rdf4j-sail-model-2.5-SNAPSHOT-javadoc.jar.asc to /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/target/nexus-staging/deferred/org/eclipse/rdf4j/rdf4j-sail-model/2.5-SNAPSHOT/rdf4j-sail-model-2.5-SNAPSHOT-javadoc.jar.asc
[INFO] Execution skipped to the last project...
[INFO] 
[INFO] --------------< org.eclipse.rdf4j:rdf4j-sail-inferencer >---------------
[INFO] Building RDF4J: Inferencer Sails 2.5-SNAPSHOT                     [4/21]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.0.0:clean (default-clean) @ rdf4j-sail-inferencer ---
[INFO] Deleting /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/inferencer/target
[INFO] 
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ rdf4j-sail-inferencer ---
[INFO] ShortRevision tag detected. The value is '7'.
[INFO] Executing: /bin/sh -c cd '/jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/inferencer' && 'git' 'rev-parse' '--verify' '--short=7' 'HEAD'
[INFO] Working directory: /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/inferencer
[INFO] Storing buildNumber: e8756fc at timestamp: 1548468964222
[WARNING] Cannot get the branch information from the git repository: 
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref

[INFO] ShortRevision tag detected. The value is '7'.
[INFO] Executing: /bin/sh -c cd '/jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/inferencer' && 'git' 'rev-parse' '--verify' '--short=7' 'HEAD'
[INFO] Working directory: /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/inferencer
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-bytecode-version) @ rdf4j-sail-inferencer ---
[INFO] Adding ignore: META-INF/**/module-info
[INFO] 
[INFO] --- maven-resources-plugin:3.0.2:resources (default-resources) @ rdf4j-sail-inferencer ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ rdf4j-sail-inferencer ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 25 source files to /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/inferencer/target/classes
[INFO] 
[INFO] --- maven-resources-plugin:3.0.2:testResources (default-testResources) @ rdf4j-sail-inferencer ---
[INFO] Not copying test resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ rdf4j-sail-inferencer ---
[INFO] Not compiling test sources
[INFO] 
[INFO] --- maven-surefire-plugin:2.21.0:test (default-test) @ rdf4j-sail-inferencer ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- animal-sniffer-maven-plugin:1.16:check (default) @ rdf4j-sail-inferencer ---
[INFO] Checking unresolved references to org.codehaus.mojo.signature:java18:1.0
[INFO] 
[INFO] --- maven-jar-plugin:2.3.1:jar (default-jar) @ rdf4j-sail-inferencer ---
[INFO] Building jar: /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/inferencer/target/rdf4j-sail-inferencer-2.5-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:2.4:jar-no-fork (attach-sources) @ rdf4j-sail-inferencer ---
[INFO] Building jar: /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/inferencer/target/rdf4j-sail-inferencer-2.5-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:2.8.1:jar (attach-javadocs) @ rdf4j-sail-inferencer ---
[INFO] 
Loading source files for package org.eclipse.rdf4j.sail.inferencer...
Loading source files for package org.eclipse.rdf4j.sail.inferencer.fc...
Loading source files for package org.eclipse.rdf4j.sail.inferencer.fc.config...
Loading source files for package org.eclipse.rdf4j.sail.inferencer.util...
Constructing Javadoc information...
1 error
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] RDF4J Storage 2.5-SNAPSHOT ......................... SUCCESS [  3.164 s]
[INFO] RDF4J: Sail API .................................... SUCCESS [ 15.920 s]
[INFO] RDF4J: Sail Model .................................. SUCCESS [  3.598 s]
[INFO] RDF4J: Inferencer Sails ............................ FAILURE [  3.795 s]
[INFO] RDF4J: Query algebra - evaluation .................. SKIPPED
[INFO] RDF4J: Sail base implementations ................... SKIPPED
[INFO] RDF4J: MemoryStore ................................. SKIPPED
[INFO] RDF4J: SailRepository .............................. SKIPPED
[INFO] RDF4J Lucene Sail API .............................. SKIPPED
[INFO] RDF4J Elastic Search Sail Index .................... SKIPPED
[INFO] RDF4J: Federation SAIL ............................. SKIPPED
[INFO] RDF4J: Query algebra - GeoSPARQL ................... SKIPPED
[INFO] RDF4J Lucene Sail Index ............................ SKIPPED
[INFO] RDF4J: SPIN ........................................ SKIPPED
[INFO] RDF4J: SPIN SAIL ................................... SKIPPED
[INFO] RDF4J: NativeStore ................................. SKIPPED
[INFO] RDF4J Lucene Sail Spin ............................. SKIPPED
[INFO] RDF4J: DatasetRepository (wrapper) ................. SKIPPED
[INFO] RDF4J Solr Sail Index .............................. SKIPPED
[INFO] RDF4J: SHACL ....................................... SKIPPED
[INFO] RDF4J: Storage 2.5-SNAPSHOT ........................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 28.864 s
[INFO] Finished at: 2019-01-25T21:16:07-05:00
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-javadoc-plugin:2.8.1:jar (attach-javadocs) on project rdf4j-sail-inferencer: MavenReportException: Error while creating archive: 
[ERROR] Exit code: 1 - Picked up JAVA_TOOL_OPTIONS: -Xmx2G -Djava.io.tmpdir=/tmp/genie.rdf4j
[ERROR] /jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/inferencer/src/main/java/org/eclipse/rdf4j/sail/inferencer/fc/CustomGraphQueryInferencer.java:21: error: cannot access MalformedQueryException
[ERROR] import org.eclipse.rdf4j.query.MalformedQueryException;
[ERROR]                               ^
[ERROR]   bad class file: /opt/public/hipp/homes/genie.rdf4j/.m2/repository/org/eclipse/rdf4j/rdf4j-query/2.5-SNAPSHOT/rdf4j-query-2.5-SNAPSHOT.jar(org/eclipse/rdf4j/query/MalformedQueryException.class)
[ERROR]     unable to access file: corrupted zip file
[ERROR]     Please remove or make sure it appears in the correct subdirectory of the classpath.
[ERROR] 
[ERROR] Command line was: /opt/public/common/java/oracle/jdk1.8.0_192_x64/jre/../bin/javadoc @options @packages
[ERROR] 
[ERROR] Refer to the generated Javadoc files in '/jobs/genie.rdf4j/rdf4j-storage-master-build/workspace/inferencer/target/apidocs' dir.
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :rdf4j-sail-inferencer
Build step 'Invoke top-level Maven targets' marked build as failure
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Not sending mail to unregistered user jerven.bolleman@sib.swiss
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