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Re: [ptp-user] debug code in Eclipse with MPI support
  • From: Fan Li <f.li@xxxxxxxxxx>
  • Date: Fri, 31 Jul 2020 20:12:23 +0000
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  • Thread-topic: [ptp-user] debug code in Eclipse with MPI support
The below pic shows the line 60 in gmx.cpp.

I stepped into this function and found that the code actually is stuck at the line 535 which is a line in subroutine of "manager.run"




And the error message is different from before


But those lines are the functions of the open-source software which I did not change at all. 

Thanks for your help.

Best wishes


Fan Li

School of Engineering and Materials Science
Queen Mary University of London
London E1 4NS
United Kingdom

From: ptp-user-bounces@xxxxxxxxxxx <ptp-user-bounces@xxxxxxxxxxx> on behalf of Beth R Tibbitts <beth@xxxxxxxxxx>
Sent: 31 July 2020 15:47
To: PTP User list <ptp-user@xxxxxxxxxxx>
Subject: Re: [ptp-user] debug code in Eclipse with MPI support
 
Can't see line 60 in your source view of gmx.cpp, which is where the error says it occurs. Can you expand the src view a bit to see the code there and right before?
...Beth
Beth Tibbitts (yeah, I'm still PTP lurking now and then.)


On Thu, Jul 23, 2020 at 5:11 AM Fan Li <f.li@xxxxxxxxxx> wrote:
Dear users

I am using the "eclipse for scientific computing" and want to debug a programme with MPI support.

The programme can run in terminal with mpi in this way

mpirun -np 4 gmx_mpi mdrun -s diff.tpr -c diff.gro -ntomp 1

Accordingly, I set the debug configure as below






After I start debugging, there is no out put from the console and no variable values are displayed.

The below screen shot after debugging



Could you tell me what is wrong?

Best wishes


Fan Li

School of Engineering and Materials Science
Queen Mary University of London
London E1 4NS
United Kingdom

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