| Re: [ptp-user] Kepler environment management *** oops ? |
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On Wednesday, July 10, 2013 07:59:19 Greg Watson <g.watson@xxxxxxxxxxxx> wrote: > Christoph, > > If you put 'module list' into a shell script and execute it from the command > line on the machine, does it work? If not, you'll need to find out from the > system administrator how to use module commands in shell scripts. > > It may be that 'module' is a shell function rather than a command, so the > script needs to be properly set up before it can use modules. If this is > the case, you may need to modify the target system configuration so that > the submission script has the additional commands required to set this up > correctly. > > Greg
Greg,
that shot hit the bulls eye !
cp@sirius:~$ ssh SuperMUC cat module_test #!/bin/bash
module list cp@sirius:~$ ssh SuperMUC module_test ./module_test: line 3: module: command not found cp@sirius:~$ ssh SuperMUC cat .bashrc . /etc/profile . /etc/profile.d/modules.sh
module load git/latest
The main question that remains - why is my .bashrc not executed prior to the modules stuff ? Is there a button that I missed ?
If I go to Project Mgr -> Properties -> C/C++ Build -> Environment and tick "Replace native environment with specified one", the .bashrc gets executed and the module function will be found. If ticking "Append variables to native environment", .bashrc is not executed and the module function is unknown.
Is this something that I should expect ? Another candidate for FAQ ? --
Mit freundlichen Grüßen / Kind regards
Dr. Christoph Pospiech High Performance & Parallel Computing Phone: +49-351 86269826 Mobile: +49-171-765 5871 E-Mail: christoph.pospiech@xxxxxxxxxx ------------------------------------------------------------------------------------------------------------------------------------------- IBM Deutschland GmbH / Vorsitzender des Aufsichtsrats: Martin Jetter Geschäftsführung: Martina Koederitz (Vorsitzende), Reinhard Reschke, Dieter Scholz, Gregor Pillen, Joachim Heel, Christian Noll Sitz der Gesellschaft: Ehningen / Registergericht: Amtsgericht Stuttgart, HRB 14562 / WEEE-Reg.-Nr. DE 99369940
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