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Re: [ptp-user] PTP and modules
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On Saturday, April 28, 2012 12:00:08 Jeffrey Overbey wrote:
> > But when I open Environment Management for this remote host, it says
> > "Jugene does not have a supported environment management system
> > installed". I guess that is not as intended ?
>
> Yes, that's probably not as intended. There's a signature it's looking
> for in the output of "module help" which, I guess, it's not finding with
> that machine's Modules installation. (There's at least one non-standard
> version of Modules floating around, so it has to be a bit cautious.)
> Could you please run the following commands and e-mail me the output.txt
> file it creates? Thanks!
>
> $ bash
> $ module help >output.txt 2>&1
> $ module -t list >>output.txt 2>&1
> $ module -t avail >>output.txt 2>&1
>
> Jeff
Jeff,
I found a second system showing this behavior, so I did as instructed above.
1. When executing all four commands as above, I am getting the following.
di69job@i01r12s30:~> cat output.txt
bash: module: command not found
bash: module: command not found
bash: module: command not found
when I leave the bash and return to the bash that was started at login,
"module help" produces an expected output, but the "module -t ..." produce the
strange error message 'ERROR: invalid command name "Jan."'
So I did the following command.
echo "repeating the commands without option -t" >> output.txt
And then repeated "module list" and "module avail" without the -t option.
I am attaching the resulting file below.
Does this help ?
I will repeat the same on the first system ("jugene") and add another post
about that soon.
--
Mit freundlichen Grüßen / Kind regards
Dr. Christoph Pospiech
High Performance & Parallel Computing
Phone: +49-351 86269826
Mobile: +49-171-765 5871
E-Mail: christoph.pospiech@xxxxxxxxxx
-------------------------------------------------------------------------------------------------------------------------------------------
IBM Deutschland GmbH / Vorsitzender des Aufsichtsrats: Martin Jetter
Geschäftsführung: Martina Koederitz (Vorsitzende), Reinhard Reschke, Dieter
Scholz, Gregor Pillen, Joachim Heel, Christian Noll
Sitz der Gesellschaft: Ehningen / Registergericht: Amtsgericht Stuttgart, HRB
14562 / WEEE-Reg.-Nr. DE 99369940
Modules Release Tcl 3.1.6 ($RCSfile: modulecmd.tcl,v $ $Revision: -1 $)
Copyright GNU GPL v2 1991
Usage: module [ switches ] [ command ]
Switches:
-t terse format avail and list
-l long format avail and list
Commands:
list | add|load modulefile [modulefile ...]
purge | rm|unload modulefile [modulefile ...]
reload | switch|swap [oldmodulefile] newmodulefile
| display|show modulefile [modulefile ...]
| avail [modulefile [modulefile ...]]
| whatis [modulefile [modulefile ...]]
| help [modulefile [modulefile ...]]
| path modulefile
| paths modulefile
| use dir [dir ...]
| unuse dir [dir ...]
| source scriptfile
| apropos|keyword string
|
initlist | initadd modulefile
initclear | initprepend modulefile
| initrm modulefile
ERROR: invalid command name "Jan."
ERROR: invalid command name "Jan."
repeating the commands without option -t
Currently Loaded Modulefiles:
1) admin/1.0 4) fortran/intel/12.1 7) mpi.ibm/5.2_PMR-fixes
2) tempdir/1.0 5) ccomp/intel/12.1 8) lrz/1.0
3) mkl/10.3 6) poe/5.2_PMR-fixes
------------ /lrz/sys/share/modules/files/applications ------------
R/parallel/2.10 icem/12.0
R/parallel/2.11 icem/12.1
R/parallel/2.12 icem/13.0(default)
R/parallel/2.13(default) icem/14.0
R/parallel/2.8 lammps/5Sep11(default)
R/parallel/2.9 lammps/Dec08
R/serial(default) lammps/May08
R/serial/2.10 maple/12
R/serial/2.11 maple/13(default)
R/serial/2.12 marc/2008.r1(default)
R/serial/2.13(default) materials-studio/5.5(default)
R/serial/2.14 materials-studio/50
R/serial/2.8 mathematica/7.0
R/serial/2.9 mathematica/8.0(default)
abinit/6.0.3 matlab/R2008A
abinit/6.8(default) matlab/R2009A
alpine/2.0(default) matlab/R2009B(default)
amber/10 matlab/R2009B_MCR
amber/11(default) matlab/R2010A
amber/9 matlab/R2010A_MCR
ansys/12.0 matlab/R2010B
ansys/12.1 matlab/R2010B_MCR
ansys/13.0(default) matlab/R2011A
ansys/14.0 matlab/R2011A_MCR
atompaw/3.0(default) matlab/R2011B
bigdft/1.5s(default) matlab/R2011B_MCR
blast/2.2.19 matlab/R2012A
blast/2.2.22(default) matlab/R2012A_MCR
castep/5.5 mdnastran/2010
cfx/12.0 mdnastran/2011(default)
cfx/12.1 molpro/2006.1
cfx/13.0(default) molpro/2010.1(default)
cfx/14.0 namd/2.6
charmm/c33b1 namd/2.7(default)
charmm/c36(default) namd/cuda
columbus/5.9.1(default) namot/2.2.0(default)
comsol/3.5a nwchem/5.1
comsol/4.1(default) nwchem/5.1.1
comsol/4.2 nwchem/6.0(default)
cp2k/Aug-2011(default) octave/3.2(default)
cp2k/cuda octave/3.4
cpmd/3.15.1(default) openfoam/2.0
dalton/2.0 openfoam/2.1(default)
dalton/2.0-cam orca/2.8.0(default)
dalton/2.0_qmmm(default) patran/2008r2(default)
desmond/2011(default) powerflow/4.1a(default)
discrete/Scalalife qespresso/4.2.1
fire/2010 qespresso/4.3.1
fire/2011(default) qespresso/4.3.2(default)
fluent/12.0 schrodinger/2009
fluent/12.1 schrodinger/2010_u1
fluent/13.0(default) schrodinger/2011(default)
fluent/14.0 siesta/2.0p
freesurfer/4.0.2 siesta/2.0s
freesurfer/4.2.0 siesta/3.0p
freesurfer/5.0.0(default) siesta/3.1p(default)
fsl/4.0.4(default) singular/3.1(default)
gamess/2010(default) tecplot/2011(default)
gaussian/03.E.01 texmacs/1.0.7(default)
gaussian/09.B.01(default) tosca/6.2(default)
gaussian/09.C.01 turbomole/6.1
grads/2.0(default) turbomole/6.2
gromacs/3.3.3 turbomole/6.3(default)
gromacs/3.3.3d turbomole/mpi/6.1
gromacs/4.0 turbomole/mpi/6.2
gromacs/4.0.3 turbomole/mpi/6.3(default)
gromacs/4.0.3d vasp/4.6
gromacs/4.0.5 vasp/4.6s
gromacs/4.0.5d vasp/5.2(default)
gromacs/4.0d wannier90/1.2(default)
gromacs/4.5(default) wien2k/09.1
gromacs/4.5d wien2k/09.2
gromacs/4.6 wien2k/10.1
gromacs/4.6d wien2k/10.1_intel
hammer/1.0 wien2k/11.1(default)
hammer/1.2(default) yt/1.5(default)
hoomd/0.8.0
------------ /lrz/sys/share/modules/files/compilers ------------
caf/g95 fortran/pgi/10.3(default)
caf/g95_cocon fortran/pgi/10.8
caf/intel(default) fortran/pgi/10.9
caf/rice fortran/pgi/11.9
ccomp/intel(default) fortran/pgi/12.3
ccomp/intel/10.1 fortran/pgi/8.0
ccomp/intel/11.0 fortran/pgi/9.0
ccomp/intel/11.1 g95/0.91(default)
ccomp/intel/12.0 g95/0.92
ccomp/intel/12.1(default) g95/0.93
ccomp/intel/9.1 gcc/3.4
ccomp/pathscale/3.2(default) gcc/4.0
ccomp/pgi/10.3(default) gcc/4.2
ccomp/pgi/10.8 gcc/4.3(default)
ccomp/pgi/10.9 gcc/4.4
ccomp/pgi/11.9 gcc/4.5
ccomp/pgi/12.3 gcc/4.6
ccomp/pgi/8.0 gcc/4.7
ccomp/pgi/9.0 ghc/6.8.2(default)
chapel/0.8 hmpp/2.3
chapel/1.0(default) hmpp/2.4(default)
fortran/intel(default) java/1.5
fortran/intel/10.1 java/1.6(default)
fortran/intel/11.0 java/1.7
fortran/intel/11.1 upc/4.0.3(default)
fortran/intel/12.0 upc/bupc/2.10
fortran/intel/12.1(default) upc/bupc/2.11
fortran/intel/9.1 upc/bupc/2.12
fortran/nag/5.2(default) upc/bupc/2.14(default)
fortran/nag/5.3 upc/sgi/1.04
fortran/pathscale/3.2(default)
------------ /lrz/sys/share/modules/files/environment ------------
admin/1.0(default) lrz/1.0(default) sge/hpc/6.2u2(default)
endian/big sge/gvs/6.2(default) tempdir/1.0(default)
endian/little(default) sge/hpc/6.1
------------ /lrz/sys/share/modules/files/graphics ------------
amira/5.2(default) molden/4.7
amira/5.3.1 molekel/5.3.0(default)
avizo/6.1(default) molekel/5.4.0
avs_express/parallel/7.1(default) opendx/4.4.4(default)
avs_express/serial(default) paraview/3.10.1(default)
avs_express/serial/7.2(default) plplot/5.6.1
blender/2.48 plplot/5.8.0(default)
blender/2.49(default) pymol/0.99
covise/6.5(default) pymol/v1.3(default)
drishti/2.0(default) qt/4.3
ensight/9.0.3(default) qt/4.5(default)
gdl/0.9(default) vapor/1.4(default)
gnuplot/4.2 vapor/2.0
gnuplot/4.4(default) visit/1.11(default)
gopenmol/3.00 visit/2.3
grace/5.1(default) visit/2.4
idl/8.1(default) vmd/1.8.6(default)
lrzgraphik/intel(default) vmd/1.8.7
------------ /lrz/sys/share/modules/files/libraries ------------
ace/5.5 fox/4.1(default) mkl/9.1_s
ace/6.0(default) goto_blas/1.13(default) mpfr/3.0(default)
acml/4.0.1 gsl/1.10 mumps/4.8.4(default)
acml/4.0.1_mp gsl/1.11 nagclib/07
acml/4.4.0(default) gsl/1.12 nagclib/08(default)
acml/4.4.0_mp gsl/1.13 nagclib/09
alps/1.3 gsl/1.14 nagf77lib/21
alps/2.0(default) gsl/1.15(default) nagf77lib/22(default)
arbb/1.0(default) hdf5/mpi/1.6 nagf77lib/23
arbb/1.0.0.015 hdf5/mpi/1.8(default) nagf90lib/04(default)
arbb/1.0.0.018 hdf5/serial(default) nagsmplib/21
arbb/1.0.0.022 hdf5/serial/1.6 nagsmplib/22(default)
arbb/1.0.0.026 hdf5/serial/1.8(default) netcdf/3.6(default)
arpack/96(default) hypre/2.0 netcdf/4.0
blacs/1.1(default) hypre/2.7b(default) netcdf/4.1
blitz/0.9(default) ipp/5.0 netcdf/mpi/4.1(default)
boost/1.45_gcc(default) ipp/5.1 opencl.intel/1.5(default)
boost/1.47_gcc ipp/5.3 parmetis/3.1(default)
cernlib/2006(default) ipp/6.1(default) petsc/3.0
cfitsio/3.26 libint/1.1.4 petsc/3.0c
cfitsio/3.28(default) liblrz/1.0(default) petsc/3.1(default)
cplex/12.1 libxc/1.1(default) petsc/3.1_debug
cplex/12.3(default) metis/3.0 petsc/3.1c
emoslib/350 metis/4.0(default) petsc/3.1c_debug
emoslib/371(default) metis/5.0 pnetcdf/1.2(default)
etsf/1.0(default) mkl/10.0 root/5.30
fftpack/4.1(default) mkl/10.0_i8 root/5.32(default)
fftpack/5 mkl/10.0_s scalapack/1.8(default)
fftw/mpi/2.1.5(default) mkl/10.1 scotch/5.1(default)
fftw/mpi/2.1.5_r4 mkl/10.1_i8 slepc/3.0
fftw/mpi/3.2 mkl/10.1_s slepc/3.1(default)
fftw/mpi/3.3 mkl/10.2 szip/2.1(default)
fftw/serial(default) mkl/10.2_i8 tbb/2.2
fftw/serial/3.2 mkl/10.2_s tbb/3.0(default)
fftw/serial/3.3(default) mkl/10.3(default) tbb/4.0
fftw/serial/v3_mkl103 mkl/10.3_i8 trilinos/10.2.1(default)
fftw/threads/v3_mkl103 mkl/10.3_s xdrfile/1.1(default)
fgsl/g95 mkl/8.1 xerces/2.7(default)
fgsl/gfortran mkl/9.0 xerces/3.1
fgsl/ifort(default) mkl/9.1
fox/4.0 mkl/9.1_i8
------------ /lrz/sys/share/modules/files/parallel ------------
cuda/2.3 mpi.mpich2/1.4/intel(default)
cuda/3.2(default) mpi.mpt/2.03
cuda/4.0 mpi.mpt/2.04
ga/4.0 mpi.ompi/1.2.3/intel(default)
ga/4.1_i8 mpi.ompi/1.3/heterogeneous
ga/4.2_ps5_i8 mpi.ompi/1.4(default)
ga/5.0(default) mpi.ompi/1.4/infiniband(default)
mpi.ibm/5.2 mpi.ompi/1.5/infiniband(default)
mpi.ibm/5.2_PMR-fixes(default) mpi.parastation/5.0(default)
mpi.ibm/5.2_gcc mpi.parastation/5.0/gcc
mpi.intel/3.2 mpi.parastation/5.0/intel(default)
mpi.intel/4.0(default) mpi.parastation/5.0/pgi
mpi.mpich2/1.0.5(default) poe/5.2
mpi.mpich2/1.0.5/intel(default) poe/5.2_PMR-fixes(default)
mpi.mpich2/1.2/gcc poe/5.2_PMR-fixes-hybrid
mpi.mpich2/1.4/gcc poe/5.2_hybrid
------------ /lrz/sys/share/modules/files/tools ------------
DRAMMS/0.1 llview/1.3(default)
DRAMMS/0.2 lrztools/1.0(default)
DRAMMS/1.7(default) m4/1.4(default)
acumem/1.0.3(default) marmot/2.4(default)
amplifier_xe/2011(default) mercurial/1.7
bash_completion/1.1(default) mercurial/2.0(default)
binutils/2.19(default) mpi_pinning/disable
cesr/0.2(default) mpi_pinning/hybrid_blocked
cgns/3.1(default) mpi_pinning/hybrid_socket
cmake/2.6 mpi_pinning/mpp
cmake/2.8(default) mpi_tracing/8.0(default)
cmake/2.8.7 mpip/3.3(default)
darcs/2.2.0(default) nco/4.0
ddt/2.5 ompp/0.6.7
ddt/3.0(default) ompp/0.7.0(default)
doxygen/1.6(default) orbacus/4.2.1(default)
doxygen/1.7 papi/4.1
eclipse/3.4 papi/4.1.3(default)
eclipse/3.5 papi/4.2
eclipse/3.6 perfcatcher/auto(default)
eclipse/3.7(default) periscope/1.3.2
forcheck/13.7 periscope/1.4(default)
forcheck/14.0 python/2.6.1(default)
forcheck/14.1(default) python/3.0.1
gdb/7.2(default) rdt/1.0(default)
git/latest(default) scalasca/1.4(default)
globus/4.0 subversion/1.4
globus/5.0 subversion/1.5
globus/5.2(default) subversion/1.6(default)
gtransfer/0.0.7(default) subversion/1.7
hwloc/1.4(default) tcltk/8.4
inspector_xe/2011(default) tcltk/8.5.2(default)
ipm/2.0(default) tgftp/default
isp/0.2 totalview/8.8
isp/0.3(default) totalview/8.9(default)
jna/3.2 valgrind/3.5(default)
jna/3.3(default) valgrind/3.6
likwid/2.1 vampir/7.5(default)
likwid/2.3(default) vampirtrace/5.12(default)
------------ /lrz/sys/share/modules/extfiles ------------
ans_opti gtransfer/exp
ansys/14.mpi mpi.intel/3.0
arbb/1.0.0.030 namd/2.8
caf_sc11 namd/2.8fast
ccomp/intel/12.1_u6 periscope/1.3.2
cfx/14.x periscope/1.4(default)
comsol/test ppe.hpct/hotfix.nov-2011(default)
cpmd/3.13.2 redis/2.0.4
fluent/14.mpi tau/2.20
fortran/intel/12.1_u6 tgftp/backup
fortran/intel/13b totalview/8.10_beta
gams/25.5.2 vampirtrace/5.11
globus/exp
