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[ptp-user] How to recover from crashed that affect synchronized projects ?

Today during a demo, my eclipse completely crashed (eclipse disgracefully 
exited and closed all windows). After restarting any attempt to synchronize 
the projects failed with a message that there is a merge conflict for some file 
blahblah.o. This is a typical git error message. The file  blahblah.o was not 
important and can be recreated by something like "make clean;make".

How to recover from this ?

I tried the following to no avail.
- project clean for the remote project fails because the synchronization prior 
to make clean failed.
- Login on remote node outside of eclipse and make clean didn't help.
- Removing remote .ptp-sync leads to error message that directory .ptp-sync is 
- Removing .ptp-sync on both got me another error message.

Any hints ?

Mit freundlichen Grüßen / Kind regards

Dr. Christoph Pospiech
High Performance & Parallel Computing
Phone: +49-351 86269826
Mobile: +49-171-765 5871
E-Mail: christoph.pospiech@xxxxxxxxxx
IBM Deutschland GmbH / Vorsitzender des Aufsichtsrats: Martin Jetter
Geschäftsführung: Martina Koederitz (Vorsitzende), Reinhard Reschke, Dieter 
Scholz, Gregor Pillen, Joachim Heel, Christian Noll
Sitz der Gesellschaft: Ehningen / Registergericht: Amtsgericht Stuttgart, HRB 
14562 / WEEE-Reg.-Nr. DE 99369940