Hi,
I have set up Eclipse, PTP, and OpenMPI according to the directions. I can’t run anything using PTP, though. In addition, it says there is only one machine, Machinemachine0, in the launcher. This is on a 64-bit Linux cluster.
I _can_ run MPI programs using OpenMPI. However, in order to use other nodes than the head node, I need to use:
mpiexec --prefix /clhome/EVANS/openmpi --machinefile machines -n 25 helloWorld
I see no place in Eclipse | Preferences to set the machine nodes.
I can also run an OpenMPI parallel program using the External Tools launcher.
I have set up a launch configuration as described in Help. When I run it, I get:
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Exception occurred during launch
Reason: Error within Debug UI:
Details: Java.lang.reflect.InvocationTargetException
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(BTW I am using Run, not Debug, to launch.)
My environment is set up in .login to point to an MPICH2 installation. I reset PATH and LD_LIBRARY_PATH in the script that launches Eclipse. BTW this was done in the shell in which I ran “sh BUILD”. Thus there _could_ be a conflict, but it doesn’t look like there should be.
I can _build_ MPICH2 applications in an MPICH2 project by setting the PATH and LD_LIBRARY_PATH in the environment for the make Project. (I am using Standard, not Managed C / C++ builds). And I can _build_ OpenMPI applications in an OpenMPI project without setting PATH and LD_LIBRARY_PATH. Thus, it seems I have the paths set up OK.
I get these messages, which I don’t understand, when starting Eclipse.
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41 blacklab.aps.anl.gov:bin>runEclipse
[1] 7010
42 blacklab.aps.anl.gov:bin>In getResourceManagerFactories
retrieved factory: Simulation, org.eclipse.ptp.simulation.core.resourcemanager
leaving getResourceManagerFactories
Your Control System Choice: '<UNDEFINED CS>'
Your Monitoring System Choice: '<UNDEFINED MS>'
No previous (or invalid) control or monitoring system selected.
Default systems set to Open Runtime Environment (ORTE). To change, use the Window->Preferences->PTP preferences page.
Your Default Control System Choice: 'Open Runtime Environment (ORTE)'
Your Default Monitoring System Choice: 'Open Runtime Environment (ORTE)'
In retrieveConfigurationWizardPageFactories
wizard page factory: org.eclipse.ptp.simulation.ui.wizards.SimulationRMConfigurationWizardPageFactory@5e28df48 for class: class org.eclipse.ptp.rmsystem.SimulationResourceManagerFactory
leaving retrieveConfigurationWizardPageFactories
XXXXXXXXXXX refreshRuntimeSystems(false), isInitialized():false
XXXXXXXXXXX refreshRuntimeSystems calling initialize(), force:false, isInitialized():false
refreshRuntimeSystems
SHUTTING DOWN CONTROL/MONITORING/PROXY systems where appropriate
User selected 1 simulated machines.
SimPreferences: Machine 0 = 1 nodes
ModelManager.runtimeNodeGeneralName - #keys = 2, #values = 2
Unknown machine ID (machine0), adding to the model.
Unknown node number (0), adding to the model.
OS = 'linux', Architecture = 'x86_64', OS_ARCH combo = 'org.eclipse.ptp.linux.x86_64'
PTP Version = 1.1.0
All Found Fragments:
update@../eclipsePlugins/eclipse/plugins/org.eclipse.ptp.macosx.x86_1.1.0/ [118]
update@../eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.ppc_1.1.0/ [126]
update@../eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.x86_1.1.0/ [138]
update@../eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.x86_64_1.1.0/ [145]
update@../eclipsePlugins/eclipse/plugins/org.eclipse.ptp.macosx.ppc_1.1.0/ [151]
Testing fragment 1 with this OS/arch - path: '/clhome/EVANS/eclipsePlugins/eclipse/plugins/org.eclipse.ptp.macosx.x86_1.1.0/'
Testing fragment 2 with this OS/arch - path: '/clhome/EVANS/eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.ppc_1.1.0/'
Testing fragment 3 with this OS/arch - path: '/clhome/EVANS/eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.x86_1.1.0/'
Testing fragment 4 with this OS/arch - path: '/clhome/EVANS/eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.x86_64_1.1.0/'
Correct fragment for our OS & arch
Searching for file in '/clhome/EVANS/eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.x86_64_1.1.0/bin/sdm'
**** FOUND IT!
OS = 'linux', Architecture = 'x86_64', OS_ARCH combo = 'org.eclipse.ptp.mpich2.proxy.linux.x86_64'
PTP Version = 1.1.0
All Found Fragments:
update@../eclipsePlugins/eclipse/plugins/org.eclipse.ptp.macosx.x86_1.1.0/ [118]
update@../eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.ppc_1.1.0/ [126]
update@../eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.x86_1.1.0/ [138]
update@../eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.x86_64_1.1.0/ [145]
update@../eclipsePlugins/eclipse/plugins/org.eclipse.ptp.macosx.ppc_1.1.0/ [151]
Testing fragment 1 with this OS/arch - path: '/clhome/EVANS/eclipsePlugins/eclipse/plugins/org.eclipse.ptp.macosx.x86_1.1.0/'
Testing fragment 2 with this OS/arch - path: '/clhome/EVANS/eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.ppc_1.1.0/'
Testing fragment 3 with this OS/arch - path: '/clhome/EVANS/eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.x86_1.1.0/'
Testing fragment 4 with this OS/arch - path: '/clhome/EVANS/eclipsePlugins/eclipse/plugins/org.eclipse.ptp.linux.x86_64_1.1.0/'
Testing fragment 5 with this OS/arch - path: '/clhome/EVANS/eclipsePlugins/eclipse/plugins/org.eclipse.ptp.macosx.ppc_1.1.0/'
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So it seems something isn’t set up right, in particular, the available machines, but I can’t see any configuration to fix it.
Thanks for any help.
-Ken
