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Re: [ptp-user] Running parallel application with PTP.
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Never mind, it's working now. :) Magda, let me know if yours still isn't after you get the Open RTE configuration stuff right, we had some similar errors so I might be able to help.
On 3/16/07, natalie <eilatann@xxxxxxxxx> wrote:
Magda - Don't forget to compile openmpi with the
--with-devel-headers flag first (otherwise it won't build ptp_orte_proxy).
Greg- I've followed exactly the same procedure as Magda, except I didn't change the Open RTE preferences (they are set automatically to /eclipse/plugins/org.eclipse.ptp.linux.x86/bin/ptp_orte_proxy), but am still getting the same error. I've tried running it from the debug perspective and starting the ORTE server manually, but nothing seems to be working.
Natalie
On 3/16/07, Magda S. <
xmaggx@xxxxxxxxx> wrote:
"Could not accept changes: The currently displayed page contains
invalid values."
After clicking OK a few times and trying to go to PTP-> OpenRTE
finally I reach the Open RTE configuration panel.
I set: ORTE|PTP proxy server to:
/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86/bin
Launch ORTE manually: unchecked.
But there is only a README file (so I can't see any point in setting
it to this directory):
You should have a file called ptp_orte_proxy here. If you don't, try compiling openmpi again with the
--with-devel-headers flag, and then run sh BUILD in your eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86 directory again.
On 3/16/07,
Greg Watson <g.watson@xxxxxxxxxxxx> wrote:
I didn't see you say anywhere that you ran the BUILD script in the
fragment directory. Have you done that step of the installation?
You shouldn't need to touch the Open RTE preferences. PTP will
automatically find the proxy if you've built it as part of the
installation.
Greg
On Mar 16, 2007, at 1:21 PM, Magda S. wrote:
> What I am doing when I want to run a parallel application:
>
> 0. I added to my PATH and LD_LIBRARY_PATH: /opt/ompi/bin and
> /opt/ompi/lib, respectively (to enable OpenMP and looking for relevant
> executables and libraries). I use OpenMP 1.2 (from March 2007)
>
> 1. I have a fresh Eclipse 3.2.2 + PTP 1.1.0 (I can see specific
> buttons, I can see perspectives in my menu, etc.)
>
> 2. I configure my mpi stuff: Window -> Preferences
> PTP -> Open RTE
> I get the error message:
> "Could not accept changes: The currently displayed page contains
> invalid values."
> After clicking OK a few times and trying to go to PTP-> OpenRTE
> finally I reach the Open RTE configuration panel.
>
> I set: ORTE|PTP proxy server to:
> /opt/eclipse-
3.2.2/plugins/org.eclipse.ptp.linux.x86/bin
> Launch ORTE manually: unchecked.
>
> But there is only a README file (so I can't see any point in setting
> it to this directory):
>
> magg@sartorius:~$ ls -la
> /opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86/bin/
> total 12
> drwxr-xr-x 2 magg magg 4096 2006-11-09 15:45 .
> drwxr-xr-x 4 magg magg 4096 2006-11-09 15:45 ..
> -rw-r--r-- 1 magg magg 32 2006-11-09 14:38 README
> magg@sartorius:~$
>
> 3. I click apply, ok, etc.
> 4. I create my mpiproject: (C managed make project; executable gnu) in
> my workspace.
> Since this is a C project the system asks me to switch to the C
> perspective. So I follow its instructions.
> 5. I create a source file names test.c.
> 6. Unfortunately, it can's see my
mpi.h, and MPI_Init, etc. but I
> think that I told it to use my OpenMP stuff (I saw previously that it
> finds my paths to OpenMP correctly). Never mind. I use properties of
> my project and add manually include and libraries in Fortran Build
> (sic!) - probably because of the photran plugin.
> 7. Now, it can see my mpi.h, MPI_Init, etc. And I can see my
> executable in my workspace project Debug directory.
> 8. I check if the program works from the terminal:
>
> magg@sartorius:~/mywork/mpiproject/Debug$ mpirun -np 8 mpiproject
>
> Fine it works.
>
> 9. According to Chengdong Li suggestions I switch to PTP Runtime
> perspective since I want to run my program from Eclipse. But before I
> check what Eclipse told to my terminal (from which I started Eclipse):
>
> -----------------
> magg@sartorius:/opt$ eclipse-3.2.2/eclipse --clean &
> [1] 13339
> magg@sartorius:/opt$ GTK Accessibility Module initialized
> In getResourceManagerFactories
> retrieved factory: Simulation,
> org.eclipse.ptp.simulation.core.resourcemanager
> leaving getResourceManagerFactories
> Your Control System Choice: '<UNDEFINED CS>'
> Your Monitoring System Choice: '<UNDEFINED MS>'
> No previous (or invalid) control or monitoring system selected.
>
> Default systems set to Open Runtime Environment (ORTE). To change,
> use the Window->Preferences->PTP preferences page.
> Your Default Control System Choice: 'Open Runtime Environment (ORTE)'
> Your Default Monitoring System Choice: 'Open Runtime Environment
> (ORTE)'
> In retrieveConfigurationWizardPageFactories
> wizard page factory:
> org.eclipse.ptp.simulation.ui.wizards.SimulationRMConfigurationWizardP
> ageFactory@1bc93a7
> for class: class
> org.eclipse.ptp.rmsystem.SimulationResourceManagerFactory
> leaving retrieveConfigurationWizardPageFactories
> XXXXXXXXXXX refreshRuntimeSystems(false), isInitialized():false
> XXXXXXXXXXX refreshRuntimeSystems calling initialize(), force:false,
> isInitialized():false
> refreshRuntimeSystems
> SHUTTING DOWN CONTROL/MONITORING/PROXY systems where appropriate
> OMPIProxyRuntimeClient - firing up proxy, waiting for connecting.
> Please wait! This can take a minute . . .
> ORTE_SERVER path = ''
> OS = 'linux', Architecture = 'x86', OS_ARCH combo =
> 'org.eclipse.ptp.linux.x86'
> PTP Version = 1.1.0
> All Found Fragments:
>
update@plugins/org.eclipse.ptp.linux.ppc/ [141]
> update@plugins/org.eclipse.ptp.linux.x86/ [142]
> update@plugins/org.eclipse.ptp.linux.x86_64/ [143]
> update@plugins/org.eclipse.ptp.macosx.ppc/ [144]
> update@plugins/org.eclipse.ptp.macosx.x86/ [145]
> Testing fragment 1 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.ppc/'
> Testing fragment 2 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86/'
> Correct fragment for our OS & arch
> Searching for file in
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86/bin/
> ptp_orte_proxy'
> Testing fragment 3 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86_64/'
> Correct fragment for our OS & arch
> Searching for file in
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86_64/bin/
> ptp_orte_proxy'
> Testing fragment 4 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.macosx.ppc/'
> Testing fragment 5 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.macosx.x86/'
> Could not find the ORTE server ('ptp_orte_proxy' binary). File not
> found in the fragment directory or developer directories. Defaulting
> to Simulation Mode.
> Failed to start up the proxy runtime.
>
> ** (Gecko:13340): CRITICAL **: gail_menu_item_ref_child: assertion `(i
>> = 0)' failed
> OS = 'linux', Architecture = 'x86', OS_ARCH combo =
> 'org.eclipse.ptp.linux.x86'
> PTP Version = 1.1.0
> All Found Fragments:
> update@plugins/org.eclipse.ptp.linux.ppc/ [141]
> update@plugins/org.eclipse.ptp.linux.x86/ [142]
> update@plugins/org.eclipse.ptp.linux.x86_64/ [143]
> update@plugins/org.eclipse.ptp.macosx.ppc/ [144]
> update@plugins/org.eclipse.ptp.macosx.x86/ [145]
> Testing fragment 1 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.ppc/'
> Testing fragment 2 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86/'
> Correct fragment for our OS & arch
> Searching for file in
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86/bin/
> ptp_orte_proxy'
> Testing fragment 3 with this OS/arch - path:
> '/opt/eclipse-3.2.2
/plugins/org.eclipse.ptp.linux.x86_64/'
> Correct fragment for our OS & arch
> Searching for file in
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86_64/bin/
> ptp_orte_proxy'
> Testing fragment 4 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.macosx.ppc/'
> Testing fragment 5 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.macosx.x86/'
> OS = 'linux', Architecture = 'x86', OS_ARCH combo =
> 'org.eclipse.ptp.linux.x86'
> PTP Version = 1.1.0
> All Found Fragments:
> update@plugins/org.eclipse.ptp.linux.ppc/ [141]
> update@plugins/org.eclipse.ptp.linux.x86/ [142]
> update@plugins/org.eclipse.ptp.linux.x86_64/ [143]
> update@plugins/org.eclipse.ptp.macosx.ppc/ [144]
> update@plugins
/org.eclipse.ptp.macosx.x86/ [145]
> Testing fragment 1 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.ppc/'
> Testing fragment 2 with this OS/arch - path:
> '/opt/eclipse-
3.2.2/plugins/org.eclipse.ptp.linux.x86/'
> Correct fragment for our OS & arch
> Searching for file in
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86/bin/sdm'
> Testing fragment 3 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86_64/'
> Correct fragment for our OS & arch
> Searching for file in
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86_64/bin/sdm'
> Testing fragment 4 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.macosx.ppc/'
> Testing fragment 5 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.macosx.x86/'
> OS = 'linux', Architecture = 'x86', OS_ARCH combo =
> 'org.eclipse.ptp.mpich2.proxy.linux.x86'
> PTP Version = 1.1.0
> All Found Fragments:
> update@plugins
/org.eclipse.ptp.linux.ppc/ [141]
> update@plugins/org.eclipse.ptp.linux.x86/ [142]
> update@plugins/org.eclipse.ptp.linux.x86_64/ [143]
> update@plugins/org.eclipse.ptp.macosx.ppc/ [144]
> update@plugins
/org.eclipse.ptp.macosx.x86/ [145]
> Testing fragment 1 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.ppc/'
> Testing fragment 2 with this OS/arch - path:
> '/opt/eclipse-
3.2.2/plugins/org.eclipse.ptp.linux.x86/'
> Testing fragment 3 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.linux.x86_64/'
> Testing fragment 4 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.macosx.ppc/'
> Testing fragment 5 with this OS/arch - path:
> '/opt/eclipse-3.2.2/plugins/org.eclipse.ptp.macosx.x86/'
>
> ** (Gecko:13340): CRITICAL **: gail_menu_item_ref_child: assertion `(i
>> = 0)' failed
>
> -----------------
>
> 10. As you can see it has some problems with running ptp_proxy_bleble.
> I check if orted is running:
>
> magg@sartorius:/opt$ ps -ef | grep orte
> magg 14857 12172 0 15:03 pts/0 00:00:00 grep orte
> magg@sartorius:/opt$
>
> It doesn't run.
>
> 11. I am in CDT perspective and I switch to PTP Runtime perspective:
> - in Eclipse it went smoothly but my terminal said:
>
> magg@sartorius:/opt$
> ** (Gecko:13340): CRITICAL **: gail_menu_item_ref_child: assertion `(i
>> = 0)' failed
>
> ** (Gecko:13340): CRITICAL **: gail_menu_item_ref_child: assertion `(i
>> = 0)' failed
>
> 12. I am checking if orted is running - no it is not running. In spite
> of this, I try to run my application: Run -> Parallel Application. I
> configure my run configuration: Debug/mpiproject as an application
> program, mpiproject as a project, number of processes 8. Press Apply
> and then Run. And ....
>
> I got: Exception occurred during launch: Reason Error within Debug UI.
> java.lang.reflect.InvocationTargetException
.
>
> I am checking what my terminal says:
> ----------------
> magg@sartorius:/opt$ XXXXXXXXXXX refreshRuntimeSystems(false),
> isInitialized():false
> XXXXXXXXXXX refreshRuntimeSystems calling initialize(), force:false,
> isInitialized():false
> refreshRuntimeSystems
> SHUTTING DOWN CONTROL/MONITORING/PROXY systems where appropriate
> User selected 1 simulated machines.
> SimPreferences: Machine 0 = 4 nodes
> ModelManager.runtimeNodeGeneralName - #keys = 5, #values = 5
> Unknown machine ID (machine0), adding to the model.
> Unknown node number (0), adding to the model.
> Unknown node number (1), adding to the model.
> Unknown node number (2), adding to the model.
> Unknown node number (3), adding to the model.
> XXXXXXXXXXXX Waiting for Universe to Populate
> MODEL MANAGER: newJob(1)
> ------------
>
> In my Eclipse machine view I can see 4 nodes.
>
> 13. I am starting from this terminal orted manually.
> magg@sartorius:/opt$ /opt/ompi/bin/orted &
> [2] 15128
>
> 14. And I am running the same configuration. But again I get the same
> message window with Debug UI.
>
> And my terminal says:
>
> magg@sartorius:/opt$ XXXXXXXXXXXX Waiting for Universe to Populate
> MODEL MANAGER: newJob(2)
>
> And my orted runs:
> magg@sartorius:/opt$ ps -ef | grep orted
> magg 15129 1 0 15:13 ? 00:00:00 /opt/ompi/bin/orted
> magg 15211 12172 0 15:16 pts/0 00:00:00 grep orted
> magg@sartorius:/opt$
>
> 15. When I switch to PTP Debug perspective I got the same message
> window with Debug UI exception.
>
>
> On 3/16/07, Chengdong Li <
ptp.eclipse@xxxxxxxxx> wrote:
>> BTW, it should not relate to Eclispe 3.2.2. I am using E3.2.2 and
>> CDT3.1.2.
>> I can get the similiar error, but when I switch to a PTP Debug
>> perspective
>> and rerun, then it works. (Hope you too :-))
>
> So I am not lucky as you :(. So still I can't run my parallel program.
>
> Best regards. Any suggestions?
> --
> Magda
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> ptp-user mailing list
> ptp-user@xxxxxxxxxxx
>
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