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Re: [ptp-dev] Indigo SR2 reminder
Wyatt,

SR2 is basically done now, so I think the best thing to do is open a bug and this will need to be addressed for Juno.

Thanks,
Greg

On Feb 15, 2012, at 1:46 PM, Wyatt Spear wrote:

I can now confirm that the failure I encounter when running a job on pbs only happens when run from eclipse.  When I take the script generated by the resource manager and submit it directly with qsub on the command line it works fine.  When I submit it through the PTP I the job runs but the error and output do not show up anywhere and the files are not available from the completed jobs menu.  The error email sent to me from PBS looks like this:

PBS Job Id: 36343.mist.cs.uoregon.edu
Job Name:   ptp_job
Exec host:  mist-0-5/0
An error has occurred processing your job, see below.
Post job file processing error; job 36343.mist.cs.uoregon.edu on host mist-0-5/0

Unable to copy file /opt/torque/spool/36343.mist.cs.uoregon.edu.OU to wspear@xxxxxxxxxxxxxxxxxxx:/storage/users/wspear/ptp_job.o36343
*** error from copy
Permission denied (publickey,gssapi-with-mic,password).
lost connection
*** end error output
Output retained on that host in: /opt/torque/undelivered/36343.mist.cs.uoregon.edu.OU

Unable to copy file /opt/torque/spool/36343.mist.cs.uoregon.edu.ER to wspear@xxxxxxxxxxxxxxxxxxx:/storage/users/wspear/ptp_job.e36343
*** error from copy
Permission denied (publickey,gssapi-with-mic,password).
lost connection
*** end error output
Output retained on that host in: /opt/torque/undelivered/36343.mist.cs.uoregon.edu.ER

On Wed, Feb 15, 2012 at 10:34 AM, Wyatt Spear <wspear@xxxxxxxxxxxxxx> wrote:
Same test, upon re-entering my workspace the inactive jobs table was full of a "Could not create the view" error.  Active jobs loaded normally.  Here's the exception:

java.lang.NullPointerException
at org.eclipse.ptp.rm.lml.ui.views.TableView.getSortColumn(TableView.java:844)
at org.eclipse.ptp.rm.lml.ui.views.TableView.createTable(TableView.java:779)
at org.eclipse.ptp.rm.lml.ui.views.TableView.createPartControl(TableView.java:472)
at org.eclipse.ui.internal.ViewReference.createPartHelper(ViewReference.java:375)
at org.eclipse.ui.internal.ViewReference.createPart(ViewReference.java:229)
at org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:595)
at org.eclipse.ui.internal.PartPane.setVisible(PartPane.java:313)
at org.eclipse.ui.internal.ViewPane.setVisible(ViewPane.java:534)
at org.eclipse.ui.internal.presentations.PresentablePart.setVisible(PresentablePart.java:180)
at org.eclipse.ui.internal.presentations.util.PresentablePartFolder.select(PresentablePartFolder.java:270)
at org.eclipse.ui.internal.presentations.util.LeftToRightTabOrder.select(LeftToRightTabOrder.java:65)
at org.eclipse.ui.internal.presentations.util.TabbedStackPresentation.selectPart(TabbedStackPresentation.java:473)
at org.eclipse.ui.internal.PartStack.refreshPresentationSelection(PartStack.java:1245)
at org.eclipse.ui.internal.PartStack.createControl(PartStack.java:662)
at org.eclipse.ui.internal.PartStack.createControl(PartStack.java:570)
at org.eclipse.ui.internal.PartSashContainer.createControl(PartSashContainer.java:568)
at org.eclipse.ui.internal.PerspectiveHelper.activate(PerspectiveHelper.java:272)
at org.eclipse.ui.internal.Perspective.onActivate(Perspective.java:981)
at org.eclipse.ui.internal.WorkbenchPage.setPerspective(WorkbenchPage.java:3713)
at org.eclipse.ui.internal.WorkbenchPage.busySetPerspective(WorkbenchPage.java:1115)
at org.eclipse.ui.internal.WorkbenchPage.access$16(WorkbenchPage.java:1099)
at org.eclipse.ui.internal.WorkbenchPage$19.run(WorkbenchPage.java:3814)
at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:70)
at org.eclipse.ui.internal.WorkbenchPage.setPerspective(WorkbenchPage.java:3812)
at org.eclipse.ui.internal.PerspectiveBarContributionItem.select(PerspectiveBarContributionItem.java:124)
at org.eclipse.ui.internal.PerspectiveBarContributionItem$1.widgetSelected(PerspectiveBarContributionItem.java:93)
at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:240)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1258)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3588)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3209)
at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:2696)
at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:2660)
at org.eclipse.ui.internal.Workbench.access$4(Workbench.java:2494)
at org.eclipse.ui.internal.Workbench$7.run(Workbench.java:674)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:667)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149)
at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:123)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:344)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:622)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:577)
at org.eclipse.equinox.launcher.Main.run(Main.java:1410)
at org.eclipse.equinox.launcher.Main.main(Main.java:1386)

---------- Forwarded message ----------
From: Wyatt Spear <wspear@xxxxxxxxxxxxxx>
Date: Tue, Feb 14, 2012 at 4:11 PM
Subject: Re: [ptp-dev] Indigo SR2 reminder
To: Parallel Tools Platform general developers <ptp-dev@xxxxxxxxxxx>


I tested a regular launch and a TAU data collection launch of a synchronized C++ Pi application from a clean workspace on 64 bit Ubuntu Linux.  Everything looks good except the error/out data wasn't available (which now appears to be an issue with our local PBS setup rather than PTP) and the current/finished jobs table formatting is still messed up (I only saw horizontal squishing though, which isn't as bad as the vertical squishing we've had in the past).  I noticed that when I un-check the columns names for the tables to get rid of them and then re-checked them so they came back, each column took up an entire panel-span, and some of the entries were left aligned while some where right aligned, seemingly at random.

=Wyatt


On Mon, Feb 13, 2012 at 2:25 PM, Greg Watson <g.watson@xxxxxxxxxxxx> wrote:
The http://download.eclipse.org/tools/ptp/builds/indigo/sr2 link contains a more recent update than the RC3 parallel package. I suggest installing the parallel package, then updating using the update site link. 

It may take an hour or so for the link to become available as the mirrors are updated.

Greg


On Feb 13, 2012, at 5:13 PM, Beth Tibbitts wrote:


You can download the parallel package RC3 build at
http://eclipse.org/downloads/index-developer.php?release=indigo

Remember this is our last chance to get changes into the Indigo parallel package, the easiest for them to download, which will be what the majority of users use to try out PTP.

Please post to ptp-dev a brief blurb about platform tested and what you are testing.
Thanks.


...Beth

Beth Tibbitts
Eclipse Parallel Tools Platform  http://eclipse.org/ptp
IBM STG - High Performance Computing Tools
Mailing Address:  IBM Corp., 745 West New Circle Road, Lexington, KY 40511

<graycol.gif>Greg Watson ---02/13/2012 04:22:34 PM---A reminder that this Wednesday is the final build for Indigo SR2. The latest release candidate can b

<ecblank.gif>
    From:
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Greg Watson <g.watson@xxxxxxxxxxxx>
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    To:
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Parallel Tools Platform general developers <ptp-dev@xxxxxxxxxxx>,
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    Date:
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02/13/2012 04:22 PM
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    Subject:
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[ptp-dev] Indigo SR2 reminder
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    Sent by:
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ptp-dev-bounces@xxxxxxxxxxx




A reminder that this Wednesday is the final build for Indigo SR2. The latest release candidate can be found at http://download.eclipse.org/tools/ptp/builds/indigo/sr2. Please test as much as you can.

Regards,
Greg
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