Re: [ptp-dev] View execution time, communication time and idle time

["Thành Trung Nguy&#7877;n" <trungnt_hut@xxxxxxxxx>]

Hi.
Thanks you for your answer. I've tried to run perfdmf_configure some time but still got that error. Is there any error with Tau eclipse plugin ? (cause the error message : ava.lang.NoSuchMethodError: edu.uoregon.tau.perfdmf.DatabaseAPI.initialize(Ljava/lang/Object;Z).
I can add a trial and upload ppk file in paraprof window manager.

Sameer Shende <sameer@xxxxxxxxxxxxxx> wrote:

Hi,
You may need to execute:
% perfdmf_configure
and choose the database name, type, login, password (say yes to storing
password in the .ParaProf/perfdmf.cfg file) and then restart Eclipse/PTP.
Also, you may want to confirm that your database is accessible from
Paraprof. Try adding a trial and upload a profile dataset to it by right
clicking on the "DB" tab in the paraprof manager window.
Thanks,
- Sameer

On Mon, 16 Jul 2007, Thành Trung Nguyễn wrote:

> Thanks for your help !
> I've tried TAU, but it alway failed when adding data to perfdmf database.
> Here the error messages from Performance Data Manager view :
>
> java.lang.NoSuchMethodError: edu.uoregon.tau.perfdmf.DatabaseAPI.initialize(Ljava/lang/Object;Z)V
> at org.eclipse.ptp.tau.perfdmf.views.PerfDMFView$ViewContentProvider.initialize(PerfDMFView.java:323)
> at org.eclipse.ptp.tau.perfdmf.views.PerfDMFView$ViewContentProvider.getElements(PerfDMFView.java:273)
> at org.eclipse.jface.viewers.StructuredViewer.getRawChildren(StructuredViewer.java:927)
> at org.eclipse.jface.viewers.AbstractTreeViewer.getRawChildren(AbstractTreeViewer.java:1144)
> at org.eclipse.jface.viewers.TreeViewer.getRawChildren(TreeViewer.java:768)
> at org.eclipse.jface.viewers.AbstractTreeViewer.getFilteredChildren(AbstractTreeViewer.java:574)
> at org.eclipse.jface.viewers.AbstractTreeViewer.getSortedChildren(AbstractTreeViewer.java:543)
> at org.eclipse.jface.viewers.AbstractTreeViewer$1.run(AbstractTreeViewer.java:728)
> at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:67)
> at org.eclipse.jface.viewers.AbstractTreeViewer.createChildren(AbstractTreeViewer.java:705)
> at org.eclipse.jface.viewers.TreeViewer.createChildren(TreeViewer.java:892)
> at org.eclipse.jface.viewers.AbstractTreeViewer$5.run(AbstractTreeViewer.java:1288)
> at org.eclipse.jface.viewers.StructuredViewer.preservingSelection(StructuredViewer.java:1323)
> at org.eclipse.jface.viewers.AbstractTreeViewer.inputChanged(AbstractTreeViewer.java:1277)
> at org.eclipse.jface.viewers.ContentViewer.setInput(ContentViewer.java:250)
> at org.eclipse.jface.viewers.StructuredViewer.setInput(StructuredViewer.java:1542)
> at org.eclipse.ptp.tau.perfdmf.views.PerfDMFView.createPartControl(PerfDMFView.java:391)
> at org.eclipse.ui.internal.ViewReference.createPartHelper(ViewReference.java:332)
> at org.eclipse.ui.internal.ViewReference.createPart(ViewReference.java:197)
> at org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:566)
> at org.eclipse.ui.internal.Perspective.showView(Perspective.java:1675)
> at org.eclipse.ui.internal.WorkbenchPage.busyShowView(WorkbenchPage.java:987)
> at org.eclipse.ui.internal.WorkbenchPage.access$13(WorkbenchPage.java:968)
> at org.eclipse.ui.internal.WorkbenchPage$13.run(WorkbenchPage.java:3514)
> at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:67)
> at org.eclipse.ui.internal.WorkbenchPage.showView(WorkbenchPage.java:3511)
> at org.eclipse.ui.internal.WorkbenchPage.showView(WorkbenchPage.java:3487)
> at org.eclipse.ptp.tau.perfdmf.PerfDMFUIPlugin.addPerformanceData(PerfDMFUIPlugin.java:91)
> at org.eclipse.ptp.tau.core.internal.TAULaunchManage$2.run(TAULaunchManage.java:736)
> at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
> at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:123)
> at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:3143)
> at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:2845)
> at org.eclipse.jface.operation.ModalContext$ModalContextThread.block(ModalContext.java:158)
> at org.eclipse.jface.operation.ModalContext.run(ModalContext.java:326)
> at org.eclipse.jface.dialogs.ProgressMonitorDialog.run(ProgressMonitorDialog.java:479)
> at org.eclipse.ui.internal.progress.ProgressMonitorJobsDialog.run(ProgressMonitorJobsDialog.java:265)
> at org.eclipse.ui.internal.progress.ProgressManager$3.run(ProgressManager.java:894)
> at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:67)
> at org.eclipse.ui.internal.progress.ProgressManager.busyCursorWhile(ProgressManager.java:929)
> at org.eclipse.ui.internal.progress.ProgressManager.busyCursorWhile(ProgressManager.java:904)
> at org.eclipse.debug.internal.ui.DebugUIPlugin.launchInForeground(DebugUIPlugin.java:834)
> at org.eclipse.debug.ui.DebugUITools.launch(DebugUITools.java:526)
> at org.eclipse.debug.internal.ui.launchConfigurations.LaunchConfigurationsDialog.handleLaunchPressed(LaunchConfigurationsDialog.java:955)
> at org.eclipse.debug.internal.ui.launchConfigurations.LaunchConfigurationsDialog.buttonPressed(LaunchConfigurationsDialog.java:304)
> at org.eclipse.jface.dialogs.Dialog$3.widgetSelected(Dialog.java:660)
> at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:90)
> at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:66)
> at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1085)
> at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3166)
> at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:2842)
> at org.eclipse.jface.window.Window.runEventLoop(Window.java:820)
> at org.eclipse.jface.window.Window.open(Window.java:796)
> at org.eclipse.debug.internal.ui.launchConfigurations.LaunchConfigurationsDialog.open(LaunchConfigurationsDialog.java:1086)
> at org.eclipse.debug.ui.DebugUITools$1.run(DebugUITools.java:383)
> at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:67)
> at org.eclipse.debug.ui.DebugUITools.openLaunchConfigurationDialogOnGroup(DebugUITools.java:387)
> at org.eclipse.debug.ui.DebugUITools.openLaunchConfigurationDialogOnGroup(DebugUITools.java:329)
> at org.eclipse.debug.ui.actions.OpenLaunchDialogAction.run(OpenLaunchDialogAction.java:80)
> at org.eclipse.debug.ui.actions.OpenLaunchDialogAction.run(OpenLaunchDialogAction.java:99)
> at org.eclipse.ui.internal.PluginAction.runWithEvent(PluginAction.java:254)
> at org.eclipse.ui.internal.WWinPluginAction.runWithEvent(WWinPluginAction.java:229)
> at org.eclipse.jface.action.ActionContributionItem.handleWidgetSelection(ActionContributionItem.java:539)
> at org.eclipse.jface.action.ActionContributionItem.access$2(ActionContributionItem.java:488)
> at org.eclipse.jface.action.ActionContributionItem$5.handleEvent(ActionContributionItem.java:400)
> at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:66)
> at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1085)
> at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3166)
> at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:2842)
> at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:1914)
> at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:1878)
> at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:419)
> at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149)
> at org.eclipse.ui.internal.ide.IDEApplication.run(IDEApplication.java:95)
> at org.eclipse.core.internal.runtime.PlatformActivator$1.run(PlatformActivator.java:78)
> at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:92)
> at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:68)
> at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:400)
> at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:177)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> at java.lang.reflect.Method.invoke(Method.java:585)
> at org.eclipse.core.launcher.Main.invokeFramework(Main.java:336)
> at org.eclipse.core.launcher.Main.basicRun(Main.java:280)
> at org.eclipse.core.launcher.Main.run(Main.java:977)
> at org.eclipse.core.launcher.Main.main(Main.java:952)
>
>
> wspear wrote: Greetings,
>
> The TAU project (http://www.cs.uoregon.edu/research/tau/home.php) adds
> performance analysis functionality to the PTP. I'll give you a quick
> overview of how to install and use it here. The web site and the
> documentation included with TAU provide more detailed information.
>
> First obtain the TAU and PDT tarballs from
> http://www.cs.uoregon.edu/research/tau/downloads.php and
> http://www.cs.uoregon.edu/research/pdt/downloads.php respectively.
>
> Extract the archives to the directory where you want them installed.
> Within their respective directories:
>
> Configure and make the PDT. This is typically done via:
> ./configure
> make install
>
> Configure and install TAU with the following minimal set of options, to start:
> ./configure -pdt= -mpilib=
> lib directory> -mpiinc=
> make install
>
> TAU has numerous options for collecting and representing different
> types of performance data (memory profiling, hardware counter data
> collection, callpath profiling, the creation of program traces, etc).
> The above configuration will allow you to produce a basic performance
> profile of your MPI program, but you may want to create a more
> advanced configuration later.
>
> You may want to add the //bin path to
> your system's PATH variable and the
> //lib path to your LD_LIBRARY_PATH
> variable. The arch-directory's name will depend on your system. It
> is called 'i386_linux' on 32-bit linux systems, for example.
>
> You may want to run perfdmf_configure (located in the //bin
> directory) as well at this point. This is not necessary to generate
> performance data, but it will allow TAU to store generated performance
> data in a database accessible from within Eclipse rather than directly
> on the file system. Just use the default options it offers (including
> a blank password).
>
> Now you can install the TAU Eclipse plugins. To do this, go to your
> /tools/src/eclipse directory. Run the
> install_plugins.sh script with the directory of your targeted eclipse
> installation as an argument (For example: ./install_plugins.sh
> /opt/eclipse). The next time you start eclipse you should see a
> 'profile' button next to the usual run and debug buttons.
>
> The TAU launch configuration accessible from the profile button is
> similar to the standard parallel launch and debug configuration
> windows. The tau-specific tab allows you to specify several
> performance data collection options. The defaults should be
> sufficient to start. When you launch your application from the TAU
> launch configuration it should execute normally and finally produce
> profile data. If you configured perfdmf the profile data will show up
> in a database browser view which you can use to launch the ParaProf
> profile analysis tool directly from eclipse. Otherwise you should see
> a new performance data directory created in your workspace. You can
> navigate to that directory and run paraprof (also located in the
> // directory) from the command line.
>
> Please don't hesitate to let me know if you have any questions or
> require assistance with TAU or the TAU plug-ins.
>
> Regards,
>
> Wyatt Spear
>
> On 7/14/07, Thành Trung Nguyễn wrote:
> > Hi !
> > I'm new here !
> > I'm using eclipse and PTP plugin to write MPI program. But I need a graphic
> > tool to show execution, communication and ilde time in each process like
> > XMPI. Does PTP has any tool can do that ?
> > Thanks !!!
> >
> >
> > ________________________________
> > Park yourself in front of a world of choices in alternative vehicles.
> > Visit the Yahoo! Auto Green Center.
> >
> >
> > _______________________________________________
> > ptp-dev mailing list
> > ptp-dev@xxxxxxxxxxx
> > https://dev.eclipse.org/mailman/listinfo/ptp-dev
> >
> >
> _______________________________________________
> ptp-dev mailing list
> ptp-dev@xxxxxxxxxxx
> https://dev.eclipse.org/mailman/listinfo/ptp-dev
>
>
>
> ---------------------------------
> Building a website is a piece of cake.
> Yahoo! Small Business gives you all the tools to get online.
_______________________________________________
ptp-dev mailing list
ptp-dev@xxxxxxxxxxx
https://dev.eclipse.org/mailman/listinfo/ptp-dev

---

Ready for the edge of your seat? 
Check out tonight's top picks on Yahoo! TV.