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In pre-RC0 builds, there was an option to select either a single-line link between two sections of code being diff'ed, or a two-line-shaded-area link. As of RC0, the option is gone and the two areas are connected by the single line link. The single line is harder to use in situations where you have many small changes being displayed (it's easy to get lost in the forest of lines). Please re-add the option to use the shaded-area link.
added option to second tab of Compare preference page. Fixed and released on 20030211