Index: model/org/eclipse/jdt/internal/core/JavaProject.java
===================================================================
RCS file: /data/cvs/eclipse/org.eclipse.jdt.core/model/org/eclipse/jdt/internal/core/JavaProject.java,v
retrieving revision 1.261
diff -u -r1.261 JavaProject.java
--- model/org/eclipse/jdt/internal/core/JavaProject.java	2 Sep 2003 16:34:42 -0000	1.261
+++ model/org/eclipse/jdt/internal/core/JavaProject.java	3 Sep 2003 15:43:28 -0000
@@ -1366,13 +1366,21 @@
 	 * @see IJavaProject
 	 */
 	public IPath getOutputLocation() throws JavaModelException {
+		// Do not create marker but log problems while getting output location
+		return this.getOutputLocation(false, true);
+	}
+	
+	/**
+	 * @see IJavaProject
+	 */
+	public IPath getOutputLocation(boolean createMarkers, boolean logProblems) throws JavaModelException {
 
 		JavaModelManager.PerProjectInfo perProjectInfo = getPerProjectInfo();
 		IPath outputLocation = perProjectInfo.outputLocation;
 		if (outputLocation != null) return outputLocation;
 
 		// force to read classpath - will position output location as well
-		this.getRawClasspath();
+		this.getRawClasspath(createMarkers, logProblems);
 		outputLocation = perProjectInfo.outputLocation;
 		if (outputLocation == null) {
 			return defaultOutputLocation();
@@ -1579,8 +1587,8 @@
 	 * @see IJavaProject
 	 */
 	public IClasspathEntry[] getRawClasspath() throws JavaModelException {
-
-		return getRawClasspath(false/*don't create markers*/, true/*log problems*/);
+		// Do not create marker but log problems while getting raw classpath
+		return getRawClasspath(false, true);
 	}
 	/**
 	 * Internal variant allowing to parameterize problem creation/logging
Index: search/org/eclipse/jdt/internal/core/search/indexing/IndexAllProject.java
===================================================================
RCS file: /data/cvs/eclipse/org.eclipse.jdt.core/search/org/eclipse/jdt/internal/core/search/indexing/IndexAllProject.java,v
retrieving revision 1.56
diff -u -r1.56 IndexAllProject.java
--- search/org/eclipse/jdt/internal/core/search/indexing/IndexAllProject.java	2 Sep 2003 17:06:12 -0000	1.56
+++ search/org/eclipse/jdt/internal/core/search/indexing/IndexAllProject.java	3 Sep 2003 15:43:28 -0000
@@ -74,7 +74,8 @@
 			final long indexLastModified = max == 0 ? 0L : index.getIndexFile().lastModified();
 
 			JavaProject javaProject = (JavaProject)JavaCore.create(this.project);
-			IClasspathEntry[] entries = javaProject.getRawClasspath(false/*don't create markers*/, false/*log problems*/);
+			// Do not create marker nor log problems while getting raw classpath (see bug 41859)
+			IClasspathEntry[] entries = javaProject.getRawClasspath(false, false);
 			IWorkspaceRoot root = this.project.getWorkspace().getRoot();
 			for (int i = 0, length = entries.length; i < length; i++) {
 				if (this.isCancelled) return false;
@@ -87,7 +88,8 @@
 						// collect output locations if source is project (see http://bugs.eclipse.org/bugs/show_bug.cgi?id=32041)
 						final HashSet outputs = new HashSet();
 						if (sourceFolder.getType() == IResource.PROJECT) {
-							outputs.add(javaProject.getOutputLocation());
+							// Do not create marker nor log problems while getting output location (see bug 41859)
+							outputs.add(javaProject.getOutputLocation(false, false));
 							for (int j = 0; j < length; j++) {
 								IPath output = entries[j].getOutputLocation();
 								if (output != null) {