### Eclipse Workspace Patch 1.0
#P org.eclipse.rse.remotecdt
Index: src/org/eclipse/rse/remotecdt/RemoteRunLaunchDelegate.java
===================================================================
RCS file: /cvsroot/dsdp/org.eclipse.tm.rse/examples/org.eclipse.rse.remotecdt/src/org/eclipse/rse/remotecdt/RemoteRunLaunchDelegate.java,v
retrieving revision 1.5
diff -u -r1.5 RemoteRunLaunchDelegate.java
--- src/org/eclipse/rse/remotecdt/RemoteRunLaunchDelegate.java	19 Sep 2006 21:57:14 -0000	1.5
+++ src/org/eclipse/rse/remotecdt/RemoteRunLaunchDelegate.java	20 Oct 2006 08:36:07 -0000
@@ -55,6 +55,8 @@
 	
 	private final static String SHELL_SERVICE = "shell.service";  //$NON-NLS-1$
 	private final static String FILE_SERVICE = "file.service";  //$NON-NLS-1$
+	private final static String EXIT_CMD = "exit"; //$NON-NLS-1$
+	private final static String CMD_DELIMITER = ";"; //$NON-NLS-1$
 	
 	/*
 	 *  (non-Javadoc)
@@ -259,8 +261,13 @@
 	
 	protected Process remoteShellExec(ILaunchConfiguration config, String remoteCommandPath,
 			String arguments) throws CoreException {
-		String remote_command = arguments == null ? spaceEscapify(remoteCommandPath) :
+		// The exit command is called to force the remote shell to close after our command 
+		// is executed. This is to prevent a running process at the end of the debug session.
+		// See Bug 158786.
+		String real_remote_command = arguments == null ? spaceEscapify(remoteCommandPath) :
 												    spaceEscapify(remoteCommandPath) + " " + arguments; //$NON-NLS-1$
+		String remote_command = real_remote_command + CMD_DELIMITER + EXIT_CMD;
+		
 		IShellService shellService = (IShellService) getConnectedRemoteService(config, SHELL_SERVICE);
 		
 		// This is necessary because runCommand does not actually run the command right now.
Index: src/org/eclipse/rse/remotecdt/HostShellAdapter.java
===================================================================
RCS file: /cvsroot/dsdp/org.eclipse.tm.rse/examples/org.eclipse.rse.remotecdt/src/org/eclipse/rse/remotecdt/HostShellAdapter.java,v
retrieving revision 1.1
diff -u -r1.1 HostShellAdapter.java
--- src/org/eclipse/rse/remotecdt/HostShellAdapter.java	19 Sep 2006 21:31:22 -0000	1.1
+++ src/org/eclipse/rse/remotecdt/HostShellAdapter.java	20 Oct 2006 08:36:07 -0000
@@ -48,6 +48,8 @@
 		hostShell.exit();
 		notifyAll();
 		try {
+			hostShellInput.close();
+			hostShellError.close();
 			inputStream.close();
 			errorStream.close();
 			outputStream.close();
@@ -56,7 +58,7 @@
 		}	
 	}
 
-	public int exitValue() {
+	public synchronized int exitValue() {
 		if(hostShell.isActive())
 			throw new IllegalThreadStateException();
 		// No way to tell what the exit value was.
@@ -76,8 +78,30 @@
 	}
 
 	public synchronized int waitFor() throws InterruptedException {
-		while(hostShell.isActive())
-			wait();
+		
+		while(hostShell.isActive()) {
+			try {
+				wait(1000);
+			} catch (InterruptedException e) {
+				// ignore because we're polling to see if shell is still active.
+			}
+		}
+		
+		try {
+			// Wait a second to try to get some more output from the target shell before closing.
+			wait(1000);
+			// Allow for the data from the stream to be read if it's available
+			if (inputStream.available() != 0 || errorStream.available() != 0)
+				throw new InterruptedException();
+	
+			hostShellInput.close();
+			hostShellError.close();
+			inputStream.close();
+			errorStream.close();
+			outputStream.close();
+		} catch (IOException e) {
+			// Ignore
+		}
 		return 0;
 	}