### Eclipse Workspace Patch 1.0
#P org.eclipse.wst.common.modulecore
Index: modulecore-src/org/eclipse/wst/common/componentcore/internal/resources/VirtualComponent.java
===================================================================
RCS file: /cvsroot/webtools/common/plugins/org.eclipse.wst.common.modulecore/modulecore-src/org/eclipse/wst/common/componentcore/internal/resources/VirtualComponent.java,v
retrieving revision 1.61
diff -u -r1.61 VirtualComponent.java
--- modulecore-src/org/eclipse/wst/common/componentcore/internal/resources/VirtualComponent.java	28 Jan 2008 00:48:17 -0000	1.61
+++ modulecore-src/org/eclipse/wst/common/componentcore/internal/resources/VirtualComponent.java	13 Aug 2008 21:57:26 -0000
@@ -14,6 +14,7 @@
 import java.util.Enumeration;
 import java.util.Iterator;
 import java.util.List;
+import java.util.Map;
 import java.util.Properties;
 
 import org.eclipse.core.resources.IProject;
@@ -267,6 +268,10 @@
 		}
 	}	
 
+	public IVirtualReference[] getReferences(Map<String, Object> options) {
+		return getReferences();
+	}
+	
 	public IVirtualReference[] getReferences() { 
 		StructureEdit core = null;
 		List references = new ArrayList();
Index: modulecore-src/org/eclipse/wst/common/componentcore/internal/builder/DependencyGraphImpl.java
===================================================================
RCS file: /cvsroot/webtools/common/plugins/org.eclipse.wst.common.modulecore/modulecore-src/org/eclipse/wst/common/componentcore/internal/builder/DependencyGraphImpl.java,v
retrieving revision 1.3.2.2
diff -u -r1.3.2.2 DependencyGraphImpl.java
--- modulecore-src/org/eclipse/wst/common/componentcore/internal/builder/DependencyGraphImpl.java	3 Jul 2008 03:44:00 -0000	1.3.2.2
+++ modulecore-src/org/eclipse/wst/common/componentcore/internal/builder/DependencyGraphImpl.java	13 Aug 2008 21:57:26 -0000
@@ -25,6 +25,7 @@
 import org.eclipse.wst.common.componentcore.ComponentCore;
 import org.eclipse.wst.common.componentcore.internal.ModulecorePlugin;
 import org.eclipse.wst.common.componentcore.internal.impl.WTPModulesResourceFactory;
+import org.eclipse.wst.common.componentcore.internal.resources.VirtualComponent;
 import org.eclipse.wst.common.componentcore.resources.IVirtualComponent;
 import org.eclipse.wst.common.componentcore.resources.IVirtualReference;
 
@@ -40,9 +41,12 @@
 	 * {A, B} }
 	 */
 	private Map<IProject, Set<IProject>> graph = null;
-
+	
 	private long modStamp = 0;
 
+	private Map<String, Object> referenceOptions = new HashMap<String, Object>();
+	
+	
 	/**
 	 * This is not public; only {@link IDependencyGraph#INSTANCE} should be
 	 * used.
@@ -153,6 +157,8 @@
 	 */
 	private void initGraph() {
 		synchronized (graphLock) {
+			referenceOptions.put("GET_JAVA_REFS", Boolean.FALSE);
+			referenceOptions.put("GET_FUZZY_EAR_REFS", Boolean.FALSE);
 			try {
 				preUpdate();
 				graph = new HashMap<IProject, Set<IProject>>();
@@ -300,7 +306,7 @@
 						for (IProject sourceProject : allProjects) {
 							IVirtualComponent component = ComponentCore.createComponent(sourceProject);
 							if (component != null) {
-								IVirtualReference[] references = component.getReferences();
+								IVirtualReference[] references = component instanceof VirtualComponent ? ((VirtualComponent)component).getReferences(referenceOptions): component.getReferences();
 								for (IVirtualReference ref : references) {
 									IVirtualComponent targetComponent = ref.getReferencedComponent();
 									if (targetComponent != null) {
@@ -320,7 +326,7 @@
 							IVirtualComponent component = ComponentCore.createComponent(sourceProject);
 							if (component != null) {
 								validRefs.clear();
-								IVirtualReference[] references = component.getReferences();
+								IVirtualReference[] references = component instanceof VirtualComponent ? ((VirtualComponent)component).getReferences(referenceOptions): component.getReferences();
 								for (IVirtualReference ref : references) {
 									IVirtualComponent targetComponent = ref.getReferencedComponent();
 									if (targetComponent != null) {
#P org.eclipse.jst.j2ee
Index: j2eecreation/org/eclipse/jst/j2ee/componentcore/J2EEModuleVirtualComponent.java
===================================================================
RCS file: /cvsroot/webtools/jeetools/plugins/org.eclipse.jst.j2ee/j2eecreation/org/eclipse/jst/j2ee/componentcore/J2EEModuleVirtualComponent.java,v
retrieving revision 1.11
diff -u -r1.11 J2EEModuleVirtualComponent.java
--- j2eecreation/org/eclipse/jst/j2ee/componentcore/J2EEModuleVirtualComponent.java	15 May 2008 02:37:47 -0000	1.11
+++ j2eecreation/org/eclipse/jst/j2ee/componentcore/J2EEModuleVirtualComponent.java	13 Aug 2008 21:57:27 -0000
@@ -50,6 +50,9 @@
 
 public class J2EEModuleVirtualComponent extends VirtualComponent implements IComponentImplFactory {
 
+	public static String GET_JAVA_REFS = "GET_JAVA_REFS";
+	public static String GET_FUZZY_EAR_REFS = "GET_FUZZY_EAR_REFS";
+	
 	public J2EEModuleVirtualComponent() {
 		super();
 	}
@@ -79,6 +82,15 @@
 		return getReferences(false, false);
 	}
 	
+	@Override
+	public IVirtualReference[] getReferences(Map<String, Object> options) {
+		Object objGetJavaRefs = options.get(GET_JAVA_REFS);
+		Object objGetFuzzyEarRefs = options.get(GET_FUZZY_EAR_REFS);
+		boolean getJavaRefs = objGetJavaRefs != null ? ((Boolean)objGetJavaRefs).booleanValue() : true;
+		boolean findFuzzyEARRefs = objGetFuzzyEarRefs != null ? ((Boolean)objGetFuzzyEarRefs).booleanValue() : false;
+		return getReferences(getJavaRefs, findFuzzyEARRefs);
+	}
+	
 	public IVirtualReference[] getReferences() {
 		return getReferences(true, false);
 	}